If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ), 'gf_id' => 'HOM05D000673', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000673' ), 'data_identifier' => 'HOM05D000673', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000673', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '851', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p01980' => 'bna', 'A02p09080' => 'bna', 'A04p06380' => 'bna', 'A08p20080' => 'bna', 'A10p13790' => 'bna', 'A10p22010' => 'bna', 'Aa31LG11G12290' => 'aar', 'Aa31LG3G12360' => 'aar', 'Aa31LG5G18620' => 'aar', 'Aa31LG8G17550' => 'aar', 'Aa31sc1870G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4080' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1800' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3895' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5376' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3962' => 'aag', 'Actinidia01223' => 'ach', 'Actinidia04802' => 'ach', 'Actinidia06893' => 'ach', 'Actinidia11014' => 'ach', 'Actinidia11093' => 'ach', 'Actinidia16319' => 'ach', 'Actinidia21556' => 'ach', 'Actinidia23961' => 'ach', 'Actinidia30322' => 'ach', 'Actinidia30467' => 'ach', 'Actinidia31059' => 'ach', 'Actinidia39394' => 'ach', 'Ah.04g161890' => 'amhyb', 'Ah.06g193730' => 'amhyb', 'Ah.10g034200' => 'amhyb', 'Ah.10g034210' => 'amhyb', 'Ah.11g047470' => 'amhyb', 'AL3G19540' => 'aly', 'AL6G24110' => 'aly', 'AL6G28470' => 'aly', 'AL7G24200' => 'aly', 'AL8G32180' => 'aly', 'Aqoxy1G00199' => 'aox', 'Aqoxy1G02373' => 'aox', 'Aqoxy2G00120' => 'aox', 'Aqoxy2G00753' => 'aox', 'Aqoxy2G02827' => 'aox', 'Aqoxy7G04023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.052ZN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JUP22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39XEAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GEU56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S3DIM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63RFF5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DR7LK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8UNI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM71XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME9AL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2WQA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q7AZJA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6C4RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ6692' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2K6QT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X936A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM2AH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z514Y3' => 'arhy', 'AT3G08580' => 'ath', 'AT4G28390' => 'ath', 'AT5G13490' => 'ath', 'AT5G17400' => 'ath', 'AT5G56450' => 'ath', 'ATR0026G015' => 'atr', 'ATR0150G002' => 'atr', 'ATR0217G010' => 'atr', 'ATR1127G198' => 'atr', 'Atru.chr10.1849' => 'acertr', 'Atru.chr10.1851' => 'acertr', 'Atru.chr10.1852' => 'acertr', 'Atru.chr10.1853' => 'acertr', 'Atru.chr10.1854' => 'acertr', 'Atru.chr11.2654' => 'acertr', 'Atru.chr3.2608' => 'acertr', 'Atru.chr6.2895' => 'acertr', 'Atru.chr7.1095' => 'acertr', 'Atru.chr8.902' => 'acertr', 'Atru.chr9.1066' => 'acertr', 'Atru.chr9.476' => 'acertr', 'AUR62000102' => 'cqu', 'AUR62009128' => 'cqu', 'AUR62014834' => 'cqu', 'AUR62017030' => 'cqu', 'AUR62019279' => 'cqu', 'AUR62032131' => 'cqu', 'AUR62038889' => 'cqu', 'AUR62039127' => 'cqu', 'AUR62039672' => 'cqu', 'AUR62042474' => 'cqu', 'AUR62044309' => 'cqu', 'BcaB03g12571' => 'bca', 'BcaB05g23268' => 'bca', 'BcaB08g36774' => 'bca', 'BcaC02g09192' => 'bca', 'BcaC02g09453' => 'bca', 'BcaC03g18555' => 'bca', 'BcaC04g18795' => 'bca', 'BcaC04g19113' => 'bca', 'BcaC04g20089' => 'bca', 'BcaC05g25868' => 'bca', 'BcaC05g29344' => 'bca', 'BcaC07g38329' => 'bca', 'BcaNung01290' => 'bca', 'BolC1t00027H' => 'bol', 'BolC2t06811H' => 'bol', 'BolC2t07638H' => 'bol', 'BolC4t25561H' => 'bol', 'BolC5t34289H' => 'bol', 'BolC8t48759H' => 'bol', 'BolC9t57649H' => 'bol', 'BolC9t58816H' => 'bol', 'BolC9t59204H' => 'bol', 'BraA02t05380Z' => 'bra', 'BraA02t05976Z' => 'bra', 'BraA03t09939Z' => 'bra', 'BraA04t16342Z' => 'bra', 'BraA08t33967Z' => 'bra', 'BraA10t43473Z' => 'bra', 'BraA10t44258Z' => 'bra', 'BraA10t44541Z' => 'bra', 'C01p00220' => 'bna', 'C02p06190' => 'bna', 'C02p09020' => 'bna', 'C03p07060' => 'bna', 'C04p39900' => 'bna', 'C05p56260' => 'bna', 'C08p10840' => 'bna', 'C09p48020' => 'bna', 'C09p59760' => 'bna', 'CAN.G1509.2' => 'can', 'CAN.G1579.10' => 'can', 'CAN.G1579.23' => 'can', 'CAN.G1579.26' => 'can', 'CAN.G1579.27' => 'can', 'CAN.G1579.28' => 'can', 'CAN.G1579.8' => 'can', 'CAN.G1676.2' => 'can', 'CAN.G1768.2' => 'can', 'CAN.G1781.16' => 'can', 'CAN.G18.20' => 'can', 'CAN.G1816.12' => 'can', 'CAN.G1816.8' => 'can', 'CAN.G1820.6' => 'can', 'CAN.G1972.2' => 'can', 'CAN.G2022.2' => 'can', 'CAN.G2075.1' => 'can', 'CAN.G209.33' => 'can', 'CAN.G2177.4' => 'can', 'CAN.G2177.5' => 'can', 'CAN.G2793.1' => 'can', 'CAN.G31.15' => 'can', 'CAN.G397.43' => 'can', 'CAN.G397.58' => 'can', 'CAN.G429.1' => 'can', 'CAN.G442.5' => 'can', 'CAN.G532.81' => 'can', 'CAN.G575.113' => 'can', 'CAN.G575.114' => 'can', 'CAN.G575.126' => 'can', 'CAN.G575.128' => 'can', 'CAN.G575.129' => 'can', 'CAN.G575.87' => 'can', 'CAN.G587.56' => 'can', 'CAN.G9.25' => 'can', 'CAN.G968.14' => 'can', 'CANSAT25G3606' => 'cansat', 'CANSAT64G3009' => 'cansat', 'CANSAT80G1266' => 'cansat', 'CANSAT80G2558' => 'cansat', 'CARHR082880' => 'chi', 'CARHR195810' => 'chi', 'CARHR199950' => 'chi', 'CARHR236130' => 'chi', 'CARHR270070' => 'chi', 'Carub.0003s0771' => 'cru', 'Carub.0006s1165' => 'cru', 'Carub.0006s1561' => 'cru', 'Carub.0007s1235' => 'cru', 'Carub.0008s1695' => 'cru', 'Ca_01291_v3' => 'car', 'Ca_07985_v3' => 'car', 'Ca_15860_v3' => 'car', 'Ca_17192_v3' => 'car', 'Ca_18935_v3' => 'car', 'Ca_27522_v3' => 'car', 'CBR_g12060' => 'cbr', 'CBR_g46364' => 'cbr', 'CBR_g47108' => 'cbr', 'CBR_g70709' => 'cbr', 'CBR_g70727' => 'cbr', 'CBR_g8681' => 'cbr', 'Cc00_g21450' => 'ccan', 'Cc02_g27830' => 'ccan', 'Cc04_g13350' => 'ccan', 'Cc05_g07460' => 'ccan', 'Cc05_g07470' => 'ccan', 'Cc08_g10780' => 'ccan', 'Cc08_g10790' => 'ccan', 'CDE01G0422' => 'cde', 'CDE04G0212' => 'cde', 'CDE04G3636' => 'cde', 'CDE06G0925' => 'cde', 'CDE09G0526' => 'cde', 'CDE12G0110' => 'cde', 'CDE12G0293' => 'cde', 'Cfa000124' => 'cfa', 'Cfa009748' => 'cfa', 'Cfa009750' => 'cfa', 'Cfa010758' => 'cfa', 'Cfa014640' => 'cfa', 'Cfa019965' => 'cfa', 'Cfa020994' => 'cfa', 'Cfa021440' => 'cfa', 'Cfa026024' => 'cfa', 'Ciclev10008927m.g' => 'ccl', 'Ciclev10015260m.g' => 'ccl', 'Ciclev10017600m.g' => 'ccl', 'Ciclev10021273m.g' => 'ccl', 'Ciclev10024104m.g' => 'ccl', 'Ciclev10033595m.g' => 'ccl', 'CiPaw.03G179200' => 'cil', 'CiPaw.04G127600' => 'cil', 'CiPaw.11G056500' => 'cil', 'CiPaw.13G004200' => 'cil', 'CiPaw.13G162700' => 'cil', 'CiPaw.16G027900' => 'cil', 'ClCG00G006490' => 'cla', 'ClCG04G011580' => 'cla', 'ClCG07G002480' => 'cla', 'ClCG08G016060' => 'cla', 'ClCG08G017060' => 'cla', 'COL.COLO4_05949' => 'col', 'COL.COLO4_21075' => 'col', 'COL.COLO4_23929' => 'col', 'COL.COLO4_24856' => 'col', 'COL.COLO4_31446' => 'col', 'COL.COLO4_32950' => 'col', 'COL.COLO4_32951' => 'col', 'Cpa.g.sc1222.2' => 'cpa', 'Cpa.g.sc3.245' => 'cpa', 'Cpa.g.sc7.188' => 'cpa', 'Cpa.g.sc83.66' => 'cpa', 'Cpa.g.sc84.70' => 'cpa', 'Cpa.g.sc883.2' => 'cpa', 'Cre06.g307300' => 'cre', 'Cre09.g386650' => 'cre', 'Cre09.g394800' => 'cre', 'CsaV3_1G006240' => 'csa', 'CsaV3_2G025530' => 'csa', 'CsaV3_2G026560' => 'csa', 'CsaV3_2G026570' => 'csa', 'CsaV3_7G005880' => 'csa', 'CSS0001386' => 'camsi', 'CSS0006158' => 'camsi', 'CSS0007229' => 'camsi', 'CSS0009540' => 'camsi', 'CSS0010503' => 'camsi', 'CSS0014607' => 'camsi', 'CSS0014680' => 'camsi', 'CSS0015886' => 'camsi', 'CSS0016428' => 'camsi', 'CSS0017278' => 'camsi', 'CSS0018107' => 'camsi', 'CSS0018392' => 'camsi', 'CSS0020736' => 'camsi', 'CSS0025549' => 'camsi', 'CSS0026843' => 'camsi', 'CSS0042099' => 'camsi', 'CSS0044207' => 'camsi', 'CSS0047934' => 'camsi', 'CSS0049404' => 'camsi', 'CSS0050452' => 'camsi', 'DCAR_000326' => 'dca', 'DCAR_002061' => 'dca', 'DCAR_003135' => 'dca', 'DCAR_014475' => 'dca', 'DCAR_021252' => 'dca', 'DCAR_029666' => 'dca', 'DCAR_031555' => 'dca', 'Dinv04812' => 'din', 'Dinv09361' => 'din', 'Dinv13393' => 'din', 'Dinv17454' => 'din', 'Dinv22191' => 'din', 'Dinv22888' => 'din', 'Dinv27997' => 'din', 'Dinv31038' => 'din', 'Dinv31063' => 'din', 'Dinv43451' => 'din', 'Duzib052G1211' => 'dzi', 'Duzib093G0685' => 'dzi', 'Duzib132G0666' => 'dzi', 'Duzib133G0396' => 'dzi', 'Duzib138G1499' => 'dzi', 'Duzib150G0003' => 'dzi', 'Duzib150G0160' => 'dzi', 'Duzib168G2194' => 'dzi', 'Duzib187G0702' => 'dzi', 'Duzib205G1853' => 'dzi', 'Duzib235G0940' => 'dzi', 'Duzib248G1626' => 'dzi', 'ECA232G1343' => 'eca', 'ECA234G1935' => 'eca', 'ECA238G2414' => 'eca', 'ECA246G3413' => 'eca', 'ECA248G0310' => 'eca', 'ECA248G0949' => 'eca', 'ECA248G1958' => 'eca', 'ECA248G3532' => 'eca', 'EL10Ac2g03836' => 'bvu', 'EL10Ac4g10292' => 'bvu', 'EL10Ac5g11184' => 'bvu', 'EL10Ac8g20397' => 'bvu', 'EL10Ac9g20796' => 'bvu', 'Eucgr.A01832' => 'egr', 'Eucgr.A01833' => 'egr', 'Eucgr.B03361' => 'egr', 'Eucgr.C00662' => 'egr', 'Eucgr.G03387' => 'egr', 'Eucgr.G03388' => 'egr', 'Eucgr.H00563' => 'egr', 'Eucgr.K01045' => 'egr', 'FAN01G0998' => 'fan', 'FAN02G3245' => 'fan', 'FAN03G1622' => 'fan', 'FAN03G2339' => 'fan', 'FAN05G1741' => 'fan', 'FAN06G2486' => 'fan', 'FAN06G4598' => 'fan', 'FAN08G2594' => 'fan', 'FAN09G1135' => 'fan', 'FAN09G4283' => 'fan', 'FAN10G0658' => 'fan', 'FAN11G2585' => 'fan', 'FAN13G2334' => 'fan', 'FAN14G4888' => 'fan', 'FAN15G2488' => 'fan', 'FAN15G3303' => 'fan', 'FAN16G3664' => 'fan', 'FAN18G1268' => 'fan', 'FAN18G2796' => 'fan', 'FAN21G1411' => 'fan', 'FAN24G0695' => 'fan', 'FAN25G2075' => 'fan', 'FAN27G3098' => 'fan', 'FAN28G0835' => 'fan', 'FvH4_2g31710' => 'fve', 'FvH4_3g29080' => 'fve', 'FvH4_5g13470' => 'fve', 'FvH4_5g17990' => 'fve', 'FvH4_6g26500' => 'fve', 'FvH4_7g00912' => 'fve', 'FvH4_7g00920' => 'fve', 'Glyma.04G051800' => 'gma', 'Glyma.05G246200' => 'gma', 'Glyma.06G052500' => 'gma', 'Glyma.06G290600' => 'gma', 'Glyma.08G054100' => 'gma', 'Glyma.08G154900' => 'gma', 'Glyma.12G116300' => 'gma', 'Glyma.12G205400' => 'gma', 'Glyma.13G203400' => 'gma', 'Glyma.13G203600' => 'gma', 'Glyma.13G295500' => 'gma', 'Glyma.13G340500' => 'gma', 'Glyma.15G273600' => 'gma', 'Gohir.A03G071250' => 'ghi', 'Gohir.A05G041400' => 'ghi', 'Gohir.A05G041450' => 'ghi', 'Gohir.A05G068600' => 'ghi', 'Gohir.A06G086500' => 'ghi', 'Gohir.A07G124800' => 'ghi', 'Gohir.A08G027900' => 'ghi', 'Gohir.A08G053800' => 'ghi', 'Gohir.A08G144900' => 'ghi', 'Gohir.A10G026700' => 'ghi', 'Gohir.A10G026733' => 'ghi', 'Gohir.A10G026766' => 'ghi', 'Gohir.A10G026800' => 'ghi', 'Gohir.A10G026850' => 'ghi', 'Gohir.A12G138800' => 'ghi', 'Gohir.D03G097800' => 'ghi', 'Gohir.D05G043100' => 'ghi', 'Gohir.D05G071600' => 'ghi', 'Gohir.D06G086000' => 'ghi', 'Gohir.D07G129200' => 'ghi', 'Gohir.D08G038600' => 'ghi', 'Gohir.D08G038700' => 'ghi', 'Gohir.D08G063500' => 'ghi', 'Gohir.D08G165900' => 'ghi', 'Gohir.D10G027216' => 'ghi', 'Gohir.D10G027232' => 'ghi', 'Gohir.D10G027248' => 'ghi', 'Gohir.D10G027264' => 'ghi', 'Gohir.D10G027280' => 'ghi', 'Gohir.D12G143200' => 'ghi', 'Gorai.001G139600' => 'gra', 'Gorai.003G102900' => 'gra', 'Gorai.004G037100' => 'gra', 'Gorai.004G037200' => 'gra', 'Gorai.004G065500' => 'gra', 'Gorai.004G173000' => 'gra', 'Gorai.008G154500' => 'gra', 'Gorai.009G044200' => 'gra', 'Gorai.009G072600' => 'gra', 'Gorai.010G099200' => 'gra', 'Gorai.011G028600' => 'gra', 'Gorai.011G028700' => 'gra', 'Gorai.011G028800' => 'gra', 'Gorai.011G028900' => 'gra', 'Gorai.011G029000' => 'gra', 'GSVIVG01002005001' => 'vvi', 'GSVIVG01004268001' => 'vvi', 'GSVIVG01005827001' => 'vvi', 'GSVIVG01008142001' => 'vvi', 'GSVIVG01012500001' => 'vvi', 'GSVIVG01020575001' => 'vvi', 'GSVIVG01025296001' => 'vvi', 'GSVIVG01035388001' => 'vvi', 'HanXRQChr01g0015451' => 'han', 'HanXRQChr03g0075341' => 'han', 'HanXRQChr03g0085041' => 'han', 'HanXRQChr06g0170121' => 'han', 'HanXRQChr06g0170131' => 'han', 'HanXRQChr06g0170431' => 'han', 'HanXRQChr07g0195481' => 'han', 'HanXRQChr09g0258581' => 'han', 'HanXRQChr09g0270301' => 'han', 'HanXRQChr10g0291091' => 'han', 'HanXRQChr10g0303361' => 'han', 'HanXRQChr17g0538421' => 'han', 'HanXRQChr17g0563531' => 'han', 'Haze_03217' => 'cav', 'Haze_13203' => 'cav', 'Haze_18167' => 'cav', 'Haze_18239' => 'cav', 'Haze_23111' => 'cav', 'Haze_23112' => 'cav', 'Haze_23115' => 'cav', 'Haze_26892' => 'cav', 'Hma1.2p1_0002F.1_g002090' => 'hma', 'Hma1.2p1_0027F.1_g017190' => 'hma', 'Hma1.2p1_0293F.1_g116220' => 'hma', 'Hma1.2p1_0312F.1_g121530' => 'hma', 'Hma1.2p1_0544F.1_g175720' => 'hma', 'Hma1.2p1_1198F.1_g266240' => 'hma', 'Hma1.2p1_1951F.1_g308780' => 'hma', 'HPP92_009132' => 'vpl', 'HPP92_010203' => 'vpl', 'HPP92_017551' => 'vpl', 'HPP92_017578' => 'vpl', 'HPP92_017579' => 'vpl', 'HPP92_017972' => 'vpl', 'HPP92_019741' => 'vpl', 'HPP92_026723' => 'vpl', 'Hund02546' => 'sun', 'Hund03329' => 'sun', 'Hund07523' => 'sun', 'Hund07879' => 'sun', 'Hund07882' => 'sun', 'Hund09951' => 'sun', 'Hund22053' => 'sun', 'Lalb_Chr01g0008071' => 'lal', 'Lalb_Chr01g0015371' => 'lal', 'Lalb_Chr03g0034031' => 'lal', 'Lalb_Chr03g0034041' => 'lal', 'Lalb_Chr05g0221671' => 'lal', 'Lalb_Chr19g0132191' => 'lal', 'Lalb_Chr19g0135181' => 'lal', 'Lalb_Chr23g0267801' => 'lal', 'Lalb_Chr24g0397041' => 'lal', 'Lj1A346G32' => 'lonja', 'Lj1A346T32' => 'lonja', 'Lj1C713T5' => 'lonja', 'Lj1g0011054' => 'lja', 'Lj2C633T4' => 'lonja', 'Lj3g0001794' => 'lja', 'Lj3g0004329' => 'lja', 'Lj3g0016130' => 'lja', 'Lj3g0018641' => 'lja', 'Lj3g0026831' => 'lja', 'Lj4g0013192' => 'lja', 'Lj5C136T15' => 'lonja', 'Lj7A266G20' => 'lonja', 'Lj7A570T52' => 'lonja', 'Lj8A109T76' => 'lonja', 'Lj8C109G8' => 'lonja', 'Lj9A631T50' => 'lonja', 'Lsat_1_v5_gn_1_107461' => 'lsa', 'Lsat_1_v5_gn_1_66200' => 'lsa', 'Lsat_1_v5_gn_1_85460' => 'lsa', 'Lsat_1_v5_gn_1_85721' => 'lsa', 'Lsat_1_v5_gn_3_25061' => 'lsa', 'Lsat_1_v5_gn_4_114461' => 'lsa', 'Lsat_1_v5_gn_4_46000' => 'lsa', 'Lsat_1_v5_gn_6_47340' => 'lsa', 'Lsat_1_v5_gn_7_35581' => 'lsa', 'Manes.03G049300' => 'mes', 'Manes.06G081600' => 'mes', 'Manes.06G166000' => 'mes', 'Manes.06G166100' => 'mes', 'Manes.07G005400' => 'mes', 'Manes.10G143900' => 'mes', 'Manes.13G144600' => 'mes', 'Mapoly0016s0183' => 'mpo', 'Mapoly0054s0043' => 'mpo', 'Mapoly0071s0069' => 'mpo', 'Mapoly0117s0031' => 'mpo', 'Mapoly0117s0032' => 'mpo', 'Mapoly0179s0021' => 'mpo', 'MBI04_g28757_MAGBIO' => 'mbi', 'MBI04_g34123_MAGBIO' => 'mbi', 'MBI04_g38441_MAGBIO' => 'mbi', 'MBI04_g38442_MAGBIO' => 'mbi', 'MBI10_g39273_MAGBIO' => 'mbi', 'MBI10_g42795_MAGBIO' => 'mbi', 'MBI15_g26247_MAGBIO' => 'mbi', 'MCO15G251' => 'mco', 'MD00G1204500' => 'mdo', 'MD02G1313200' => 'mdo', 'MD03G1145100' => 'mdo', 'MD03G1145700' => 'mdo', 'MD03G1178500' => 'mdo', 'MD06G1095100' => 'mdo', 'MD06G1204800' => 'mdo', 'MD07G1008900' => 'mdo', 'MD07G1009000' => 'mdo', 'MD07G1009200' => 'mdo', 'MD08G1063700' => 'mdo', 'MD09G1244400' => 'mdo', 'MD10G1013300' => 'mdo', 'MD11G1198100' => 'mdo', 'MD14G1215900' => 'mdo', 'MD15G1057900' => 'mdo', 'MD17G1126000' => 'mdo', 'MD17G1236300' => 'mdo', 'MD17G1236400' => 'mdo', 'Medtr2g098070' => 'mtr', 'Medtr3g028590' => 'mtr', 'Medtr3g104500' => 'mtr', 'Medtr4g078545' => 'mtr', 'Medtr8g036880' => 'mtr', 'Medtr8g107270' => 'mtr', 'MELO3C001392.2' => 'cme', 'MELO3C002052.2' => 'cme', 'MELO3C010750.2' => 'cme', 'MELO3C010845.2' => 'cme', 'MELO3C018705.2' => 'cme', 'MELO3C030119.2' => 'cme', 'Migut.D00586' => 'egut', 'Migut.D01620' => 'egut', 'Migut.E01779' => 'egut', 'Migut.M00168' => 'egut', 'Migut.N02306' => 'egut', 'MSTRG.11654' => 'ama', 'MSTRG.15248' => 'ama', 'MSTRG.1686' => 'ama', 'MSTRG.18421' => 'ama', 'MSTRG.21387' => 'ama', 'MSTRG.28075' => 'ama', 'MSTRG.9585' => 'ama', 'Nitab4.5_0000023g0110' => 'nta', 'Nitab4.5_0000492g0080' => 'nta', 'Nitab4.5_0000634g0170' => 'nta', 'Nitab4.5_0000638g0090' => 'nta', 'Nitab4.5_0000720g0090' => 'nta', 'Nitab4.5_0000720g0100' => 'nta', 'Nitab4.5_0001752g0020' => 'nta', 'Nitab4.5_0001925g0140' => 'nta', 'Nitab4.5_0002026g0050' => 'nta', 'Nitab4.5_0002449g0050' => 'nta', 'Nitab4.5_0002477g0010' => 'nta', 'Nitab4.5_0005436g0030' => 'nta', 'Nitab4.5_0006164g0040' => 'nta', 'Nitab4.5_0006721g0010' => 'nta', 'Nitab4.5_0007228g0010' => 'nta', 'Nitab4.5_0007505g0020' => 'nta', 'Nitab4.5_0015729g0010' => 'nta', 'Nn1g02897' => 'nnu', 'Nn1g04148' => 'nnu', 'Nn1g06480' => 'nnu', 'Nn2g15454' => 'nnu', 'Nn3g18552' => 'nnu', 'Nn3g20754' => 'nnu', 'Nn3g21611' => 'nnu', 'Nn4g25672' => 'nnu', 'Nn5g31044' => 'nnu', 'Nn6g35504' => 'nnu', 'Nn7g36151' => 'nnu', 'Nn8g38820' => 'nnu', 'Oeu007471.1' => 'oeu', 'Oeu007472.1' => 'oeu', 'Oeu010998.1' => 'oeu', 'Oeu015668.1' => 'oeu', 'Oeu015669.1' => 'oeu', 'Oeu025861.1' => 'oeu', 'Oeu036069.1' => 'oeu', 'Oeu036329.1' => 'oeu', 'Oeu054512.1' => 'oeu', 'Os02g0718900' => 'osa', 'Os05g0302700' => 'osa', 'Os05g0539600' => 'osa', 'Os11g0661300' => 'osa', 'Peaxi162Scf00013g00737' => 'pax', 'Peaxi162Scf00029g02813' => 'pax', 'Peaxi162Scf00059g00126' => 'pax', 'Peaxi162Scf00062g01022' => 'pax', 'Peaxi162Scf00327g00911' => 'pax', 'Peaxi162Scf00428g00416' => 'pax', 'Peaxi162Scf00968g00213' => 'pax', 'Peaxi162Scf01415g00034' => 'pax', 'PGR031G1296' => 'pgr', 'PGR031G3383' => 'pgr', 'PGR031G3470' => 'pgr', 'PGR042G0475' => 'pgr', 'PGR083G1577' => 'pgr', 'PGSC0003DMG400004065' => 'stu', 'PGSC0003DMG400006806' => 'stu', 'PGSC0003DMG400013596' => 'stu', 'PGSC0003DMG400031867' => 'stu', 'PGSC0003DMG400032824' => 'stu', 'Phvul.002G329900' => 'pvu', 'Phvul.005G020700' => 'pvu', 'Phvul.005G102000' => 'pvu', 'Phvul.009G078000' => 'pvu', 'Phvul.011G126000' => 'pvu', 'Phvul.011G213200' => 'pvu', 'Phvul.L009843' => 'pvu', 'Potri.001G019400' => 'ptr', 'Potri.001G267800' => 'ptr', 'Potri.003G204600' => 'ptr', 'Potri.006G227100' => 'ptr', 'Potri.007G139100' => 'ptr', 'Potri.009G062200' => 'ptr', 'Potri.012G062500' => 'ptr', 'Potri.017G012800' => 'ptr', 'Potri.018G062350' => 'ptr', 'Pp3c14_22400' => 'ppa', 'Pp3c14_23440' => 'ppa', 'Pp3c14_26050' => 'ppa', 'Pp3c14_26060' => 'ppa', 'Pp3c16_2360' => 'ppa', 'Pp3c17_16040' => 'ppa', 'Pp3c17_16070' => 'ppa', 'Pp3c17_16140' => 'ppa', 'Pp3c1_2340' => 'ppa', 'Pp3s383_30' => 'ppa', 'PRCOL_00001228' => 'pco', 'Prupe.1G410600' => 'ppe', 'Prupe.2G012200' => 'ppe', 'Prupe.3G139400' => 'ppe', 'Prupe.4G244400' => 'ppe', 'Prupe.5G208700' => 'ppe', 'Psat4g001520' => 'psa', 'Psat4g147200' => 'psa', 'Psat5g036440' => 'psa', 'Psat5g204040' => 'psa', 'Psat5g208240' => 'psa', 'Psat5g208280' => 'psa', 'Psat5g286280' => 'psa', 'Psat7g168640' => 'psa', 'PSO063G4071' => 'pso', 'PSO170G3862' => 'pso', 'PSO210G0697' => 'pso', 'PSO210G5829' => 'pso', 'PSO339G1923' => 'pso', 'PSO339G5351' => 'pso', 'PSO357G0498' => 'pso', 'PSO384G3313' => 'pso', 'PSO384G4755' => 'pso', 'PSO541G0792' => 'pso', 'PSO675G6322' => 'pso', 'PSO782G3271' => 'pso', 'QL01p005141' => 'qlo', 'QL02p000982' => 'qlo', 'QL02p092316' => 'qlo', 'QL02p092343' => 'qlo', 'QL03p009088' => 'qlo', 'QL03p009132' => 'qlo', 'QL03p009150' => 'qlo', 'QL04p007037' => 'qlo', 'QL04p007292' => 'qlo', 'QL05p041316' => 'qlo', 'QL08p039682' => 'qlo', 'QL10p020404' => 'qlo', 'RcHm_v2.0_Chr1g0315841' => 'rch', 'RcHm_v2.0_Chr1g0315851' => 'rch', 'RcHm_v2.0_Chr1g0363301' => 'rch', 'RcHm_v2.0_Chr2g0123151' => 'rch', 'RcHm_v2.0_Chr2g0127661' => 'rch', 'RcHm_v2.0_Chr4g0387111' => 'rch', 'RcHm_v2.0_Chr5g0051451' => 'rch', 'RcHm_v2.0_Chr6g0283411' => 'rch', 'RcHm_v2.0_Chr6g0311111' => 'rch', 'RcHm_v2.0_Chr7g0183601' => 'rch', 'Rhsim01G0191100' => 'rsi', 'Rhsim06G0139200' => 'rsi', 'Rhsim10G0016100' => 'rsi', 'Rhsim10G0016300' => 'rsi', 'Rhsim11G0043300' => 'rsi', 'Rhsim12G0150200' => 'rsi', 'Rhsim13G0223000' => 'rsi', 'Sabra01G0013700' => 'sbr', 'Sabra03G0151300' => 'sbr', 'Sabra06G0175700' => 'sbr', 'Sabra07G0112100' => 'sbr', 'Sabra07G0118500' => 'sbr', 'Sabra09G0046000' => 'sbr', 'Sabra12G0045200' => 'sbr', 'Sabra16G0164000' => 'sbr', 'Sabra17G0010400' => 'sbr', 'SalBow1G4844' => 'sbo', 'SalBow4G0113' => 'sbo', 'SalBow4G1149' => 'sbo', 'SalBow5G0460' => 'sbo', 'SalBow5G5668' => 'sbo', 'SalBow6G3436' => 'sbo', 'SalBow6G5731' => 'sbo', 'SalBow6G6637' => 'sbo', 'SalBow7G0648' => 'sbo', 'SalBow7G3694' => 'sbo', 'SalBow7G3933' => 'sbo', 'Sc04g0004140' => 'sci', 'Sc06g0004520' => 'sci', 'Sc09g0000610' => 'sci', 'Sc16g0011560' => 'sci', 'Sc21g0003080' => 'sci', 'Sc24g0002020' => 'sci', 'Sed0007629' => 'sed', 'Sed0008345' => 'sed', 'Sed0008669' => 'sed', 'Sed0018168' => 'sed', 'Sed0018170' => 'sed', 'Sed0018185' => 'sed', 'Sed0018881' => 'sed', 'Sed0020260' => 'sed', 'SEGI_03567' => 'sgi', 'SEGI_08544' => 'sgi', 'SEGI_24857' => 'sgi', 'SGA_v2.0_scaffold163G38022' => 'sas', 'SGA_v2.0_scaffold247G44862' => 'sas', 'SGA_v2.0_scaffold3G01514' => 'sas', 'SGA_v2.0_scaffold42G16047' => 'sas', 'SGA_v2.0_scaffold5G02974' => 'sas', 'SGA_v2.0_scaffold85G26706' => 'sas', 'SGA_v2.0_scaffold8G04606' => 'sas', 'SHI10387' => 'shi', 'SHI17452' => 'shi', 'SHI18728' => 'shi', 'SMO124G0001' => 'smo', 'SMO164G0096' => 'smo', 'SMO287G0003' => 'smo', 'SMO328G0003' => 'smo', 'SMO351G0257' => 'smo', 'SMO367G0283' => 'smo', 'Solyc01g014210.1' => 'sly', 'Solyc01g087070.4' => 'sly', 'Solyc06g069410.3' => 'sly', 'Solyc07g053830.3' => 'sly', 'Solyc08g063010.3' => 'sly', 'Solyc08g063030.2' => 'sly', 'Solyc11g062130.2' => 'sly', 'Solyc11g062190.2' => 'sly', 'Sopen01g008340' => 'spe', 'Sopen01g034150' => 'spe', 'Sopen06g026690' => 'spe', 'Sopen07g027800' => 'spe', 'Sopen08g018590' => 'spe', 'Sopen11g024080' => 'spe', 'Sopen11g024100' => 'spe', 'Sp3g07030' => 'spa', 'Sp6g18260' => 'spa', 'Sp6g26820' => 'spa', 'Sp6g30530' => 'spa', 'Sp7g26350' => 'spa', 'TAR623G1285' => 'tar', 'TAR624G0755' => 'tar', 'TAR626G1060' => 'tar', 'TAR626G1274' => 'tar', 'TAR633G0629' => 'tar', 'TAR633G2300' => 'tar', 'TAR636G1779' => 'tar', 'THA.LOC104804056' => 'tha', 'THA.LOC104804439' => 'tha', 'THA.LOC104809855' => 'tha', 'THA.LOC104819070' => 'tha', 'THA.LOC104820852' => 'tha', 'THA.LOC104824698' => 'tha', 'THA.LOC104826674' => 'tha', 'Thecc.01G411700' => 'tca', 'Thecc.02G182700' => 'tca', 'Thecc.03G107100' => 'tca', 'Thecc.06G184700' => 'tca', 'Thecc.06G184800' => 'tca', 'Thecc.09G055900' => 'tca', 'Thecc.09G229200' => 'tca', 'Thhalv10013800m.g' => 'esa', 'Thhalv10013920m.g' => 'esa', 'Thhalv10014052m.g' => 'esa', 'Thhalv10020919m.g' => 'esa', 'Thhalv10025467m.g' => 'esa', 'TPR.G12293' => 'tpr', 'TPR.G1427' => 'tpr', 'TPR.G1841' => 'tpr', 'TPR.G20653' => 'tpr', 'TPR.G27577' => 'tpr', 'TPR.G2855' => 'tpr', 'TPR.G5196' => 'tpr', 'TPR.G6885' => 'tpr', 'TWI09G0885' => 'twi', 'TWI15G0466' => 'twi', 'TWI18G0171' => 'twi', 'TWI23G0878' => 'twi', 'TWI32G0416' => 'twi', 'TWI53G0587' => 'twi', 'TWI59G0524' => 'twi', 'TWI60G1071' => 'twi', 'TWI63G0013' => 'twi', 'TWI63G1653' => 'twi', 'TWI73G0178' => 'twi', 'unitig_22.g6636' => 'ugi', 'unitig_46.g17911' => 'ugi', 'unitig_62.g23326' => 'ugi', 'unitig_747.g21628' => 'ugi', 'unitig_85.g27359' => 'ugi', 'vmacro00132' => 'vma', 'vmacro00133' => 'vma', 'vmacro04199' => 'vma', 'vmacro04200' => 'vma', 'vmacro12074' => 'vma', 'vmacro12327' => 'vma', 'vmacro13659' => 'vma', 'vmacro16478' => 'vma', 'VMungo0251G1583' => 'vmu', 'VMungo0251G1916' => 'vmu', 'VMungo1080G0102' => 'vmu', 'VMungo1080G0835' => 'vmu', 'VMungo1080G1754' => 'vmu', 'VMungo1127G0304' => 'vmu', 'VMungo1127G0873' => 'vmu', 'VMungo1309G2134' => 'vmu', 'Zm00001eb002060' => 'zma', 'Zm00001eb189380' => 'zma', 'Zm00001eb239090' => 'zma', 'Zm00001eb252870' => 'zma', 'Zm00001eb294240' => 'zma', 'Zm00001eb381580' => 'zma' ) $gf_id = 'HOM05D000673' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000673' ) $data_identifier = 'HOM05D000673' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 11, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 36, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 20, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 8, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 6, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 19, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 17, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 12, 'rch' => (int) 10, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 11, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1